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@VEuPathDB

VEuPathDB Bioinformatics Resource Center

VEuPathDB

The Eukaryotic Pathogen, Vector & Host Informatics Resource — a Bioinformatics Resource Center providing integrated genomic, functional, and population data for eukaryotic pathogens, invertebrate vectors of disease, and their hosts.

🌐 veupathdb.org

Resources

Site Focus
AmoebaDB Amoebozoa
CryptoDB Cryptosporidium and related apicomplexans
FungiDB Fungi and oomycetes
GiardiaDB Giardia and diplomonads
MicrosporidiaDB Microsporidia
PiroplasmaDB Babesia and Theileria
PlasmoDB Plasmodium
ToxoDB Toxoplasma and related coccidians
TrichDB Trichomonas
TriTrypDB Kinetoplastids
VectorBase Invertebrate vectors of human pathogens
HostDB Host responses to infection
OrthoMCL Ortholog groups across the tree of life
ClinEpiDB Clinical epidemiology studies
MicrobiomeDB Microbiome studies

In this organization

  • Websites and services — the WDK-based websites, web services, and data APIs behind the resources above
  • Data loading workflows — *-nextflow repositories implement the analysis pipelines used to build each release
  • Shared tooling — reusable CI workflows live in VEuPathDB/.github

Contributing

Issues and pull requests are welcome on individual repositories.

Popular repositories Loading

  1. humann-nextflow humann-nextflow Public

    run kneaddata+humann for a list of samples using nextflow

    Python 5 1

  2. ApiCommonData ApiCommonData Public

    Perl 4 3

  3. EbrcWebsiteCommon EbrcWebsiteCommon Public

    Perl 3 3

  4. ApiCommonWebsite ApiCommonWebsite Public

    Perl 3 1

  5. web-monorepo web-monorepo Public

    A monorepo that contains all frontend code for VEuPathDB websites

    TypeScript 3

  6. gente gente Public

    Forked from sciurus/gente

    A web application for self-service LDAP password changes

    Perl 2

Repositories

Showing 10 of 341 repositories
  • VEuPathDB/pathfinder-app's past year of commit activity
    Python 0 Apache-2.0 0 15 6 Updated Oct 31, 2026
  • VEuPathDB/EbrcWebsiteCommon's past year of commit activity
    Perl 3 Apache-2.0 3 11 4 Updated Oct 31, 2026
  • VEuPathDB/ai-assistant-platform's past year of commit activity
    Python 0 0 0 0 Updated Oct 31, 2026
  • ai-wdk-mcp Public
    VEuPathDB/ai-wdk-mcp's past year of commit activity
    Python 0 0 0 0 Updated Oct 31, 2026
  • VEuPathDB/ai-veupathdb-client's past year of commit activity
    Python 0 0 0 0 Updated Oct 31, 2026
  • VEuPathDB/vdi-plugin-bigwig's past year of commit activity
    Perl 0 Apache-2.0 0 0 0 Updated Oct 31, 2026
  • vdi-lib-perl-utils Public

    perl utils for use by vdi plugins

    VEuPathDB/vdi-lib-perl-utils's past year of commit activity
    Perl 0 Apache-2.0 0 0 0 Updated Oct 31, 2026
  • vdi-lib-plugin-rnaseq Public

    Code shared between the RnaSeq and BigWig VDI Plugins

    VEuPathDB/vdi-lib-plugin-rnaseq's past year of commit activity
    Perl 0 0 0 0 Updated Oct 31, 2026
  • web-monorepo Public

    A monorepo that contains all frontend code for VEuPathDB websites

    VEuPathDB/web-monorepo's past year of commit activity
    TypeScript 3 Apache-2.0 0 282 38 Updated Oct 31, 2026
  • VEuPathDB/ApiCommonModel's past year of commit activity
    Perl 1 Apache-2.0 1 5 17 Updated Oct 31, 2026

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