Max Planck Institute of Immunobiology and Epigenetics

A snakemake pipeline for 10X genomics cellranger

demultiplexing pipeline

1. Push button 2. Get results 3. Publish

Differential accessibility and time-course analysis for ATAC-seq data, with likelihood-ratio tests, gaussian process regression and optional motif analysis and footprinting.

Laboratory Information Management System 👩🏻‍🔬 🧬 👨🏽‍💻

Customizable workflows based on snakemake and python for the analysis of NGS data

A pipeline to transfer the Nanopore reads to end users

material for R-Course

Implementation of AlphaGenome API jupyter notebook.