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iGEM/UCSD evolutionary biology and bioinformatics group

42 followers
Philadelphia
http://lab.hyphy.org

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hyphy hyphy Public

HyPhy 2.5.x (Maintenance Mode — bug fixes only). All active development has moved to HyPhy 3: https://github.com/veg/hyphy-3

HyPhy 275 72
hivtrace hivtrace Public

JavaScript 23 15
phylotree.js phylotree.js Public

Interactive viewer of phylogenetic trees

JavaScript 204 78

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All C# C++ CSS Go HTML HyPhy JavaScript Julia Jupyter Notebook Nextflow PostScript Python R Ruby Rust SCSS Shell Svelte TeX TypeScript

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Showing 10 of 122 repositories

datamonkey-js-server Public

veg/datamonkey-js-server's past year of commit activity

JavaScript 3 7 0 11 Updated Oct 31, 2026
cawlign Public

veg/cawlign's past year of commit activity

C++ 4 MIT 3 0 1 Updated Oct 30, 2026
rhiztype Public
Rust CLI and WebAssembly (WASM) browser engine for screening aligned or unaligned HIV-1 FASTA sequences for subtype and recombinant mosaic architecture

veg/rhiztype's past year of commit activity

Rust 0 MIT 0 0 1 Updated Oct 30, 2026
hyphy-3 Public
HyPhy v3. We are not in 1997 anymore

veg/hyphy-3's past year of commit activity

C++ 13 3 3 1 Updated Oct 30, 2026
datamonkey-js Public
Datamonkey - Run state-of-the-art statistical models through the comfort of your browser

veg/datamonkey-js's past year of commit activity

JavaScript 10 10 0 10 Updated Oct 30, 2026
rhizaeon-code Public
Rhizaeon recombination detection

veg/rhizaeon-code's past year of commit activity

HTML 0 MIT 1 0 0 Updated Oct 29, 2026
HyphAeon Public

veg/HyphAeon's past year of commit activity

Python 13 MIT 4 16 0 Updated Oct 29, 2026
phylotree.js Public
Interactive viewer of phylogenetic trees

veg/phylotree.js's past year of commit activity

JavaScript 204 MIT 78 0 0 Updated Oct 27, 2026
silverback-user-manual Public
silverback-user-manual

veg/silverback-user-manual's past year of commit activity

JavaScript 0 0 0 0 Updated Oct 27, 2026
tools-iuc Public Forked from galaxyproject/tools-iuc
Tool Shed repositories maintained and developed by the Intergalactic Utilities Commission

veg/tools-iuc's past year of commit activity

HTML 0 MIT 561 3 0 Updated Oct 26, 2026

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